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SCIENTIFIC TEAM

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I like to understand how things work and I always found biology to be a fascinating way for me to look “under the hood”. I am trying to figure out how a series of complicated procedures within a cell translate into cellular behavior and decision making. I also hope to understand how perturbation of the normal state can eventually lead to disease.

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My lab is at CZ Biohub in San Francisco and we are always looking to interact with people with an interest in understanding human disease at the molecular level. 

Principal Investigator

SPYROS DARMANIS, PhD

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I received my BS in Biomolecular Engineering and a minor in bioinformatics at the University of California, Santa Cruz. As an undergrad I worked in Dr. Zhu Wang's Lab, investigating the many pathways involved in Prostate Cancer. After graduation, I began working at the Chan Zuckerburg Biohub as a research associate under Dr. Spyros Darmanis. I am involved in the effort to build a moues aging cell atlas. I aspire to improve current cancer treatments along with understanding biological pathways stem cells undergo.

Research Associate

ALEXANDER ZEE

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I received my BS and MS from California State University East Bay. There I studied local adapation of native oyster populations among the greater Bay Area using population level NGS methods. After I joined the Bivona lab at UCSF, where I used similar NGS methods to understand the genomic landscapes during lung cancer evolution. At the Biohub I use single cell transcirptomics to understand tumor heterogeneity in lung cancer cells and the tumor microenviornment. I am particularly interested in the changes within these cell populations at different treatment responses and how they play a role in resistance development against personalized therapies.

Senior Research Associate

ASHLEY MAYNARD

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Bing is interested in applying experimental and bioinformatics approaches to study animal development and human disease. She is a Drosophila geneticist by training, a method adapter by experience, and a nonscientific literature lover at heart.

Scientist II

BING WU, PhD

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I am developing models and visualizations to extract insights from single cell transcriptome data of primary human skin cells. We are interested in the heterogeneity of such cells during early development and chronological aging, which may provide new insights into the pathology of skin malignancies. Outside of science, I enjoy traveling and surfing. 

Bioinformatics Scientist

DANIEL LE, PhD

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Hailing from the veritable swamp lands of (Central) New Jersey, Lincoln Harris received his BA from the last bastion of Quakerism that is Swarthmore College, then immediately fled his East Coast confines and manifest destined himself to sunny California. He cut his teeth on single-cell data analysis under the tutelage of Spyros Darmanis, and now spends his time writing his own analysis packages and occasionally mentoring the youth. His research interests include single-cell mutation calling and its application to cancer genomics, as well as the evolutionary genomics of invertebrate sea critters.

Research Associate 

LINCOLN HARRIS

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Research Associate II

MICHAEL BORJA

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Research Associate

SHAYAN HOSSEINZADEH

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I got my AS in Biotechnology at City College of San Francisco (CCSF), and I'm on the way to get a BS in Biotechnology at Northeastern University. When I was at CCSF, I was a lab assistant. I maintained the  cell culture lab and maintained cell-lines for students using. I also had an internship at The Joint BioEnergy Institute as a Strain Archivist and Lab Operation. As a Research Intern under Dr. Spyros Darmanis, I have a wonderful opportunity to explore the single cell world. I am involved in the mouse aging cell atlas project.

Research Intern

WEILUN TAN

CZ BIOHUB INTERNAL COLLABORATORS​

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I studied Biomedical Engineering and got a PhD in Systems Biology which allows to me operate at the intersection of intersection of biology and medicine as viewed through the lens of data science. During my PhD I investigated how drug resistance emerges during chemotherapy and discovered that cancer cells can adapt to the presence of drug by acquiring a reversible resistant behaviour in response to the treatment. Before joining the CZ Biohub I was a postdoctoral fellow at King’s College London, where I explored the mechanisms of cellular differentiation in the skin. Now as a member to Data Science Platform at CZ Biohub I lead the computational effort of building the first mouse aging cell atlas. I am passionate about innovation and technology and want to use computational tools to advance fundamental knowledge of cell behaviour in health and disease to improve healthcare and wellbeing.

Data Scientist

ANGELA OLIVEIRA PISCO, PhD

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Dr. Olga Botvinnik is a bioinformatics scientist at Chan Zuckerberg Biohub, a non-profit biomedical research institute. She is a genomics expert interested in a “grand unified theory of cells,” by applying computer science and machine learning algorithms to biological data, especially interested in sequencing weird creatures such as ticks. She holds two S.B. degrees, one in Mathematics and one in Biological Engineering from the Massachusetts Institute of Technology. She also holdsa M.S. in Bioinformatics and Biomolecular Engineering from UC Santa Cruz, and she completed her education with a PhD in Bioinformatics and Systems Biology from UC San Diego. She is a NumFOCUS John Hunter Technical Fellowship and NDSEG Fellowship recipient, and Hertz Fellowship Finalist. She runs a weekly Twitch livestreaming channel called “Bioinformatics Beyonce” that showcases real bioinformatics work such as genome assembly, open-source software and cloud computing, and interviews with scientists about their research and day-to-day work. Open science, open data, open source.

Data Scientist

OLGA BOTVINNIK, PhD

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Norma Neff carried out graduate work in Biochemistry at the University of California, Berkeley in the laboratory of Dr. Michael Chamberlin and focused on the mechanism of termination of transcription by E. coli RNA polymerase.  During this work she became interested in testing mutants in the subunits and took the Cold Spring Harbor summer course in Bacterial Genetics.  One of the instructors was David Botstein and she became a Damon Runyon Postdoctoral Fellow in his laboratory at MIT working on yeast molecular genetics.  Using chicken tubulin genes she cloned the first yeast tubulin genes and with Jim Thomas and Jim Haber demonstrated that homologous recombination could knockout genes and introduce new sequences in yeast cells.

Joining the Molecular Biology Program at Memorial Sloan-Kettering her lab isolated the first yeast gene to have 2 distinct enzymatic activities created from a protein splicing event, creating an extein and an intein.  At the New York Blood Center she joined Dr. James German and Dr. Nathan Ellis to characterize the activities of the Bloom Syndrome DNA Helicase and demonstrate its nuclear location in PML bodies and the nucleolus.  Moving to Stanford she joined Dr. Richard Myers ENCODE program and began making and sequencing ChIP-seq libraries on the Illumina GA platform.

After joining Stephen Quake’s laboratory at Stanford she established a sequencing program for the Stem Cell Institute and successfully sequenced a wide variety of libraries on a number of Illumina platforms as well as 454, Helicos, Ion Torrent, PacBio and Oxford Nanopore.  As the Director of the Genomics Platform at the Chan Zuckerberg Biohub she manages sequencing services, continues to work on single cell RNAseq, single molecule sequencing, and participates in the development of diagnostics as well as the Cell Atlas single cell projects.

Genomics Platform Director

NORMA NEFF, PhD

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I received BS in Biomolecular Engineering from UC Santa Cruz. I’ve since then joined a liquid biopsy company and worked as a lab associate in a clinical/CLIA laboratory for short stint before joining the technology development group as a research associate. There, I worked on possible methods for early cancer detection and reoccurrence monitoring on cell free DNA using NGS. At CZ Biohub, I am part of the Genomics group, working with different groups to answer their sequencing questions as well as keeping up with their sequencing needs. My other projects include working with collaborating groups in understanding their non-model species, such as Ticks and Botryllus.

Senior Research Associate

MICHELLE TAN

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I got my BA at UC Berkeley where I studied molecular cell biology with an emphasis in developmental biology. Shortly after graduation, I joined the Quake Lab working on microfluidics and next-generation sequencing. I went off to industry for many years working with cell free DNA and RNA for transplant, cancer and infectious disease diagnosis. At CZ Biohub, I'm part of the Genomics team, working with everyones sequencing and library needs. On the side I'm working on single cell RNA-sequencing on ISRIB treated mice. I strive to understand aging and disease to help improve care and patient lives.

Scientist I

RENE SIT

FORMER LAB MEMBERS

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