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2019

Li, Q., Cheng, Z., Zhou, L., Darmanis, S., Neff, N. F., Okamoto, J., . . . Barres, B. A. (2019). Developmental Heterogeneity of Microglia and Brain Myeloid Cells Revealed by Deep Single-Cell RNA Sequencing. Neuron, 101(2). doi:10.1016/j.neuron.2018.12.006

Wilkinson, M., Darmanis, S., Pisco, A. O., & Huber, G. (2019). Persistent Features of Intermittent Transcription. bioRxiv. doi:10.1101/650895

Pisco, A. O., Schaum, N., Mcgeever, A., Karkanias, J., Neff, N. F., Darmanis, S., . . . Quake, S. R. (2019). A Single Cell Transcriptomic Atlas Characterizes Aging Tissues in the Mouse. bioRxiv. doi:10.1101/661728

Schaum, N., Lehallier, B., Hahn, O., Hosseinzadeh, S., Lee, S. E., Sit, R., . . . Darmanis, S., Wyss-Coray, T. (2019). The murine transcriptome reveals global aging nodes with organ-specific phase and amplitude. bioRxiv. doi:10.1101/662254

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Xiaojie Qiu, Yan Zhang, Dian Yang, Shayan Hosseinzadeh, Li Wang, Ruoshi Yuan, SongXu, Yian Ma, Joseph Replogle, Spyros Darmanis, Jianhua Xing, Jonathan S Weissman (2019). Mapping Vector Field of  Single Cells. bioRxiv. doi: https://doi.org/10.1101/696724 

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2018

Croote, D., Darmanis, S., Nadeau, K. C., & Quake, S. R. (2018). High-affinity allergen-specific human antibodies cloned from single IgE B cell transcriptomes. Science, 362(6420), 1306-1309. doi:10.1126/science.aau2599

The Tabula Muris Consortium, Quake SR, Wyss-Coray T, Darmanis S. (2018) Single-cell transcriptomic characterization of 20 organs and tissues from individual mice creates a Tabula Muris. Nature. 2018 Oct. 3. doi: 10.1038/s41586-018-0590-4

2017

Darmanis, S., Sloan, S. A., Croote, D., Mignardi, M., Chernikova, S., Samghababi, P., . . . Quake, S. R. (2017). Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma. Cell Reports, 21(5), 1399-1410. doi:10.1016/j.celrep.2017.10.030

Sloan, S. A., Darmanis, S., Huber., ... Quake S.R., Barres A.B., Pasca S.P. (2017) Human Astrocyte Maturation Captured in 3D Cerebral Cortical Spheroids Derived from Pluripotent Stem Cells. Neuron, 95(4), 779-790.e6. doi: 10.1016/j.neuron.2017.07.035

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